addCVTerm(CVTerm term, bool newBag) | libsbmlcs.SBase | |
addCVTerm(CVTerm term) | libsbmlcs.SBase | |
addValidator(SBMLValidator validator) | libsbmlcs.SBMLDocument | |
appendAnnotation(XMLNode annotation) | libsbmlcs.SBase | |
appendAnnotation(string annotation) | libsbmlcs.SBase | |
appendNotes(XMLNode notes) | libsbmlcs.SBase | |
appendNotes(string notes) | libsbmlcs.SBase | |
checkCompatibility(SBase arg0) | libsbmlcs.SBase | |
checkConsistency() | libsbmlcs.SBMLDocument | |
checkInternalConsistency() | libsbmlcs.SBMLDocument | |
checkL1Compatibility() | libsbmlcs.SBMLDocument | |
checkL2v1Compatibility() | libsbmlcs.SBMLDocument | |
checkL2v2Compatibility() | libsbmlcs.SBMLDocument | |
checkL2v3Compatibility() | libsbmlcs.SBMLDocument | |
checkL2v4Compatibility() | libsbmlcs.SBMLDocument | |
checkL3v1Compatibility() | libsbmlcs.SBMLDocument | |
checkMathMLNamespace(XMLToken elem) | libsbmlcs.SBase | |
clearValidators() | libsbmlcs.SBMLDocument | |
clone() | libsbmlcs.SBMLDocument | |
connectToParent(SBase parent) | libsbmlcs.SBase | |
convert(ConversionProperties props) | libsbmlcs.SBMLDocument | |
createModel(string sid) | libsbmlcs.SBMLDocument | |
createModel() | libsbmlcs.SBMLDocument | |
disablePackage(string pkgURI, string pkgPrefix) | libsbmlcs.SBase | |
Dispose() | libsbmlcs.SBMLDocument | virtual |
divideAssignmentsToSIdByFunction(string id, ASTNode function) | libsbmlcs.SBase | |
enableDefaultNS(string package, bool flag) | libsbmlcs.SBMLDocument | |
enablePackage(string pkgURI, string pkgPrefix, bool flag) | libsbmlcs.SBase | |
Equals(Object sb) | libsbmlcs.SBase | |
expandFunctionDefinitions() | libsbmlcs.SBMLDocument | |
expandInitialAssignments() | libsbmlcs.SBMLDocument | |
getAncestorOfType(int type, string pkgName) | libsbmlcs.SBase | |
getAncestorOfType(int type) | libsbmlcs.SBase | |
getAnnotation() | libsbmlcs.SBase | |
getAnnotationString() | libsbmlcs.SBase | |
getApplicableValidators() | libsbmlcs.SBMLDocument | |
getColumn() | libsbmlcs.SBase | |
getConversionValidators() | libsbmlcs.SBMLDocument | |
getCVTerm(long n) | libsbmlcs.SBase | |
getCVTerms() | libsbmlcs.SBase | |
getDefaultLevel() | libsbmlcs.SBMLDocument | static |
getDefaultVersion() | libsbmlcs.SBMLDocument | static |
getElementByMetaId(string metaid) | libsbmlcs.SBMLDocument | |
getElementBySId(string id) | libsbmlcs.SBMLDocument | |
getElementFromPluginsByMetaId(string metaid) | libsbmlcs.SBase | |
getElementFromPluginsBySId(string id) | libsbmlcs.SBase | |
getElementName() | libsbmlcs.SBMLDocument | |
getError(long n) | libsbmlcs.SBMLDocument | |
getErrorLog() | libsbmlcs.SBMLDocument | |
GetHashCode() | libsbmlcs.SBase | |
getId() | libsbmlcs.SBase | |
getLevel() | libsbmlcs.SBase | |
getLine() | libsbmlcs.SBase | |
getListOfAllElements() | libsbmlcs.SBase | |
getListOfAllElementsFromPlugins() | libsbmlcs.SBase | |
getLocationURI() | libsbmlcs.SBMLDocument | |
getMetaId() | libsbmlcs.SBase | |
getModel() | libsbmlcs.SBMLDocument | |
getModelHistory() | libsbmlcs.SBase | |
getName() | libsbmlcs.SBase | |
getNamespaces() | libsbmlcs.SBMLDocument | |
getNotes() | libsbmlcs.SBase | |
getNotesString() | libsbmlcs.SBase | |
getNumCVTerms() | libsbmlcs.SBase | |
getNumErrors() | libsbmlcs.SBMLDocument | |
getNumErrors(long severity) | libsbmlcs.SBMLDocument | |
getNumPlugins() | libsbmlcs.SBase | |
getNumValidators() | libsbmlcs.SBMLDocument | |
getPackageName() | libsbmlcs.SBase | |
getPackageRequired(string package) | libsbmlcs.SBMLDocument | |
getPackageVersion() | libsbmlcs.SBase | |
getParentSBMLObject() | libsbmlcs.SBase | |
getPkgRequired(string package) | libsbmlcs.SBMLDocument | |
getPlugin(string package) | libsbmlcs.SBase | |
getPlugin(long n) | libsbmlcs.SBase | |
getResourceBiologicalQualifier(string resource) | libsbmlcs.SBase | |
getResourceModelQualifier(string resource) | libsbmlcs.SBase | |
getSBMLDocument() | libsbmlcs.SBase | |
getSBMLNamespaces() | libsbmlcs.SBase | |
getSBOTerm() | libsbmlcs.SBase | |
getSBOTermAsURL() | libsbmlcs.SBase | |
getSBOTermID() | libsbmlcs.SBase | |
getTypeCode() | libsbmlcs.SBMLDocument | |
getValidator(long index) | libsbmlcs.SBMLDocument | |
getVersion() | libsbmlcs.SBase | |
hasNonstandardIdentifierBeginningWith(string prefix) | libsbmlcs.SBase | |
hasRequiredAttributes() | libsbmlcs.SBase | |
hasRequiredElements() | libsbmlcs.SBase | |
hasValidLevelVersionNamespaceCombination() | libsbmlcs.SBase | |
isEnabledDefaultNS(string package) | libsbmlcs.SBMLDocument | |
isIgnoredPackage(string pkgURI) | libsbmlcs.SBMLDocument | |
isIgnoredPkg(string pkgURI) | libsbmlcs.SBMLDocument | |
isPackageEnabled(string pkgName) | libsbmlcs.SBase | |
isPackageURIEnabled(string pkgURI) | libsbmlcs.SBase | |
isPkgEnabled(string pkgName) | libsbmlcs.SBase | |
isPkgURIEnabled(string pkgURI) | libsbmlcs.SBase | |
isSetAnnotation() | libsbmlcs.SBase | |
isSetId() | libsbmlcs.SBase | |
isSetMetaId() | libsbmlcs.SBase | |
isSetModelHistory() | libsbmlcs.SBase | |
isSetName() | libsbmlcs.SBase | |
isSetNotes() | libsbmlcs.SBase | |
isSetPackageRequired(string package) | libsbmlcs.SBMLDocument | |
isSetPkgRequired(string package) | libsbmlcs.SBMLDocument | |
isSetSBOTerm() | libsbmlcs.SBase | |
matchesRequiredSBMLNamespacesForAddition(SBase sb) | libsbmlcs.SBase | |
matchesSBMLNamespaces(SBase sb) | libsbmlcs.SBase | |
multiplyAssignmentsToSIdByFunction(string id, ASTNode function) | libsbmlcs.SBase | |
operator!=(SBase lhs, SBase rhs) | libsbmlcs.SBase | static |
operator==(SBase lhs, SBase rhs) | libsbmlcs.SBase | static |
prependStringToAllIdentifiers(string prefix) | libsbmlcs.SBase | |
printErrors(OStream stream) | libsbmlcs.SBMLDocument | |
printErrors() | libsbmlcs.SBMLDocument | |
removeFromParentAndDelete() | libsbmlcs.SBase | |
removeTopLevelAnnotationElement(string elementName, string elementURI) | libsbmlcs.SBase | |
removeTopLevelAnnotationElement(string elementName) | libsbmlcs.SBase | |
renameMetaIdRefs(string oldid, string newid) | libsbmlcs.SBase | |
renameSIdRefs(string oldid, string newid) | libsbmlcs.SBase | |
renameUnitSIdRefs(string oldid, string newid) | libsbmlcs.SBase | |
replaceSIDWithFunction(string id, ASTNode function) | libsbmlcs.SBase | |
replaceTopLevelAnnotationElement(XMLNode annotation) | libsbmlcs.SBase | |
replaceTopLevelAnnotationElement(string annotation) | libsbmlcs.SBase | |
SBMLDocument(long level, long version) | libsbmlcs.SBMLDocument | |
SBMLDocument(long level) | libsbmlcs.SBMLDocument | |
SBMLDocument() | libsbmlcs.SBMLDocument | |
SBMLDocument(SBMLNamespaces sbmlns) | libsbmlcs.SBMLDocument | |
SBMLDocument(SBMLDocument orig) | libsbmlcs.SBMLDocument | |
setAnnotation(XMLNode annotation) | libsbmlcs.SBase | |
setAnnotation(string annotation) | libsbmlcs.SBase | |
setApplicableValidators(byte appl) | libsbmlcs.SBMLDocument | |
setConsistencyChecks(int category, bool apply) | libsbmlcs.SBMLDocument | |
setConsistencyChecksForConversion(int category, bool apply) | libsbmlcs.SBMLDocument | |
setConversionValidators(byte appl) | libsbmlcs.SBMLDocument | |
setId(string sid) | libsbmlcs.SBase | |
setLevelAndVersion(long level, long version, bool strict) | libsbmlcs.SBMLDocument | |
setLevelAndVersion(long level, long version) | libsbmlcs.SBMLDocument | |
setLocationURI(string uri) | libsbmlcs.SBMLDocument | |
setMetaId(string metaid) | libsbmlcs.SBase | |
setModel(Model m) | libsbmlcs.SBMLDocument | |
setModelHistory(ModelHistory history) | libsbmlcs.SBase | |
setName(string name) | libsbmlcs.SBase | |
setNamespaces(XMLNamespaces xmlns) | libsbmlcs.SBase | |
setNotes(XMLNode notes) | libsbmlcs.SBase | |
setNotes(string notes, bool addXHTMLMarkup) | libsbmlcs.SBase | |
setNotes(string notes) | libsbmlcs.SBase | |
setPackageRequired(string package, bool flag) | libsbmlcs.SBMLDocument | |
setPkgRequired(string package, bool flag) | libsbmlcs.SBMLDocument | |
setSBMLNamespacesAndOwn(SBMLNamespaces sbmlns) | libsbmlcs.SBase | |
setSBOTerm(int value) | libsbmlcs.SBase | |
setSBOTerm(string sboid) | libsbmlcs.SBase | |
swigCMemOwn | libsbmlcs.SBase | protected |
toSBML() | libsbmlcs.SBase | |
unsetAnnotation() | libsbmlcs.SBase | |
unsetCVTerms() | libsbmlcs.SBase | |
unsetId() | libsbmlcs.SBase | |
unsetMetaId() | libsbmlcs.SBase | |
unsetModelHistory() | libsbmlcs.SBase | |
unsetName() | libsbmlcs.SBase | |
unsetNotes() | libsbmlcs.SBase | |
unsetSBOTerm() | libsbmlcs.SBase | |
updateSBMLNamespace(string package, long level, long version) | libsbmlcs.SBMLDocument | |
validateSBML() | libsbmlcs.SBMLDocument | |
writeExtensionElements(XMLOutputStream stream) | libsbmlcs.SBase | |