public class GeneAssociation extends SBase
Constructor and Description |
---|
GeneAssociation()   |
GeneAssociation(FbcPkgNamespaces fbcns)   |
GeneAssociation(GeneAssociation source)   |
GeneAssociation(long level)   |
GeneAssociation(long level,
long version)   |
GeneAssociation(long level,
long version,
long pkgVersion)   |
GeneAssociation(XMLNode node,
FbcPkgNamespaces fbcns)   |
Modifier and Type | Method and Description |
---|---|
GeneAssociation |
cloneObject()
Creates and returns a deep copy of this
SBase object. |
Association |
createAssociation()   |
void |
delete()
Explicitly deletes the underlying native object.
|
Association |
getAssociation()   |
String |
getElementName()
Returns the XML element name of this object.
|
String |
getReaction()   |
int |
getTypeCode()
Returns the libSBML type code for this object.
|
boolean |
isSetAssociation()   |
boolean |
isSetReaction()   |
int |
setAssociation(Association association)   |
int |
setReaction(String reaction)   |
XMLNode |
toXML()   |
int |
unsetAssociation()   |
int |
unsetId()
Unsets the value of the 'id' attribute of this SBML object.
|
int |
unsetReaction()   |
addCVTerm, addCVTerm, appendAnnotation, appendAnnotation, appendNotes, appendNotes, disablePackage, enablePackage, equals, getAncestorOfType, getAncestorOfType, getAnnotation, getAnnotationString, getColumn, getCVTerm, getCVTerms, getElementByMetaId, getElementBySId, getLevel, getLine, getListOfAllElements, getListOfAllElementsFromPlugins, getMetaId, getModel, getModelHistory, getNamespaces, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getPlugin, getResourceBiologicalQualifier, getResourceModelQualifier, getSBMLDocument, getSBOTerm, getSBOTermAsURL, getSBOTermID, getVersion, hashCode, hasValidLevelVersionNamespaceCombination, isPackageEnabled, isPackageURIEnabled, isSetAnnotation, isSetMetaId, isSetModelHistory, isSetNotes, isSetSBOTerm, matchesRequiredSBMLNamespacesForAddition, matchesSBMLNamespaces, removeFromParentAndDelete, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, renameMetaIdRefs, renameSIdRefs, renameUnitSIdRefs, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setMetaId, setModelHistory, setNamespaces, setNotes, setNotes, setNotes, setSBOTerm, setSBOTerm, toSBML, unsetAnnotation, unsetCVTerms, unsetMetaId, unsetModelHistory, unsetName, unsetNotes, unsetSBOTerm
public GeneAssociation() throws SBMLConstructorException
SBMLConstructorException
public GeneAssociation(FbcPkgNamespaces fbcns) throws SBMLConstructorException
SBMLConstructorException
public GeneAssociation(GeneAssociation source) throws SBMLConstructorException
SBMLConstructorException
public GeneAssociation(long level) throws SBMLConstructorException
SBMLConstructorException
public GeneAssociation(long level, long version) throws SBMLConstructorException
SBMLConstructorException
public GeneAssociation(long level, long version, long pkgVersion) throws SBMLConstructorException
SBMLConstructorException
public GeneAssociation(XMLNode node, FbcPkgNamespaces fbcns) throws SBMLConstructorException
SBMLConstructorException
public GeneAssociation cloneObject()
SBase
object.
cloneObject
 in class SBase
SBase
object.public Association createAssociation()
public void delete()
In general, application software will not need to call this method directly. The Java language binding for libSBML is implemented as a language wrapper that provides a Java interface to libSBML's underlying C++/C code. Some of the Java methods return objects that are linked to objects created not by Java code, but by C++ code. The Java objects wrapped around them will be deleted when the garbage collector invokes the corresponding C++ finalize()
methods for the objects. The finalize()
methods in turn call the GeneAssociation.delete()
method on the libSBML object.
This method is exposed in case calling programs want to ensure that the underlying object is freed immediately, and not at some arbitrary time determined by the Java garbage collector. In normal usage, callers do not need to invoke GeneAssociation.delete()
themselves.
public Association getAssociation()
public String getElementName()
This is overridden by subclasses to return a string appropriate to the
SBML component. For example, Model
defines it as returning
'model'
, CompartmentType
defines it as returning 'compartmentType'
,
and so on.
getElementName
 in class SBase
public String getReaction()
public int getTypeCode()
This method may return the type code of this SBML object, or it may
return SBML_UNKNOWN
. This
is because subclasses of SBase
are not required to implement this
method to return a type code. This method is meant primarily for the
LibSBML C interface, in which class and subclass information is not
readily available.
getTypeCode
 in class SBase
SBML_UNKNOWN
(the default).
GeneAssociation.getElementName()
,
SBase.getPackageName()
public boolean isSetAssociation()
public boolean isSetReaction()
public int setAssociation(Association association)
public int setReaction(String reaction)
public int unsetAssociation()
public int unsetId()
Most (but not all) objects in SBML include two common attributes: 'id'
and 'name'. The identifier given by an object's 'id' attribute value
is used to identify the object within the SBML model definition.
Other objects can refer to the component using this identifier. The
data type of 'id' is always either Sid
or
UnitSId
, depending on the object in question. Both
data types are defined as follows:
letter .= 'a'..'z','A'..'Z' digit .= '0'..'9' idChar .= letter | digit | '_' SId .= ( letter | '_' ) idChar*
The equality of SId
and UnitSId
type values
in SBML is determined by an exact character sequence match i.e.,
comparisons of these identifiers must be performed in a case-sensitive
manner. This applies to all uses of SId
and
UnitSId
.
public int unsetReaction()