Interface | Description |
---|---|
libsbmlConstants |   |
Class | Description |
---|---|
AlgebraicRule |
Implementation of SBML's AlgebraicRule construct.
|
AssignmentRule |
Implementation of SBML's AssignmentRule construct.
|
Association |   |
ASTNode |
Abstract Syntax Tree (AST) representation of a
mathematical expression.
|
ASTNodeList |   |
BoundingBox |   |
Compartment |
Implementation of SBML's Compartment construct.
|
CompartmentGlyph |   |
CompartmentType |
Implementation of SBML's Level 2's CompartmentType construct.
|
CompBase |   |
CompExtension |   |
CompModelPlugin |   |
CompPkgNamespaces |
Class to store level, version and namespace information of SBML extension
package.
|
CompSBasePlugin |   |
CompSBMLDocumentPlugin |   |
Constraint |
Implementation of SBML's Constraint construct.
|
ConversionOption |
Class of object that encapsulates a conversion option.
|
ConversionProperties |
Class of object that encapsulates the properties of an SBML converter.
|
CubicBezier |   |
Curve |   |
CVTerm |
Representation of MIRIAM-compliant controlled vocabulary annotation.
|
CVTermList |   |
Date |
Representation of MIRIAM-compliant dates used in
ModelHistory . |
DateList |   |
Delay |
Implementation of SBML's Delay construct for Event.
|
Deletion |   |
Dimensions |   |
Event |
Implementation of SBML's Event construct.
|
EventAssignment |
Implementation of SBML's EventAssignment construct for Event.
|
ExternalModelDefinition |   |
FbcExtension |   |
FbcModelPlugin |   |
FbcPkgNamespaces |
Class to store level, version and namespace information of SBML extension
package.
|
FbcSpeciesPlugin |   |
FluxBound |   |
FluxObjective |   |
FunctionDefinition |
Implementation of SBML's FunctionDefinition construct.
|
GeneAssociation |   |
GeneralGlyph |   |
GraphicalObject |   |
InitialAssignment |
Implementation of SBML's InitialAssignment construct.
|
KineticLaw |
Implementation of SBML's KineticLaw construct.
|
L3ParserSettings |
A helper class for controlling the behavior of the text-string
formula parser.
|
Layout |   |
LayoutExtension |   |
LayoutModelPlugin |   |
LayoutPkgNamespaces |
Class to store level, version and namespace information of SBML extension
package.
|
LayoutSpeciesReferencePlugin |   |
libsbml |
Wrapper class for global methods and constants defined by libSBML.
|
LineSegment |   |
ListOf |
Parent class for the various SBML 'ListOfXYZ' classes.
|
ListOfCompartmentGlyphs |   |
ListOfCompartments |
Implementation of SBML Level 2's ListOfCompartments construct.
|
ListOfCompartmentTypes |
Implementation of SBML's ListOfCompartmentTypes construct.
|
ListOfConstraints |
Implementation of SBML's ListOfConstraints construct.
|
ListOfDeletions |   |
ListOfEventAssignments |
Implementation of SBML's ListOfEventAssignments construct.
|
ListOfEvents |
Implementation of SBML's ListOfEvents construct.
|
ListOfExternalModelDefinitions |   |
ListOfFluxBounds |   |
ListOfFluxObjectives |   |
ListOfFunctionDefinitions |
Implementation of SBML's ListOfFunctionDefinitions construct.
|
ListOfGeneAssociations |   |
ListOfGraphicalObjects |   |
ListOfInitialAssignments |
Implementation of SBML's ListOfInitialAssignments construct.
|
ListOfLayouts |   |
ListOfLineSegments |   |
ListOfLocalParameters |
Implementation of SBML Level 3's ListOfLocalParameters construct.
|
ListOfModelDefinitions |   |
ListOfObjectives |   |
ListOfParameters |
Implementation of SBML's ListOfParameters construct.
|
ListOfPorts |   |
ListOfReactionGlyphs |   |
ListOfReactions |
Implementation of SBML's ListOfReactions construct.
|
ListOfReferenceGlyphs |   |
ListOfReplacedElements |   |
ListOfRules |
Implementation of SBML's ListOfRules construct.
|
ListOfSpecies |
Implementation of SBML Level 2's ListOfSpecies construct.
|
ListOfSpeciesGlyphs |   |
ListOfSpeciesReferenceGlyphs |   |
ListOfSpeciesReferences |
Implementation of SBML's ListOfSpeciesReferences construct.
|
ListOfSpeciesTypes |
Implementation of SBML's ListOfSpeciesTypes construct.
|
ListOfSubmodels |   |
ListOfTextGlyphs |   |
ListOfUnitDefinitions |
Implementation of SBML's ListOfUnitDefinitions construct.
|
ListOfUnits |
Implementation of SBML's ListOfUnits construct.
|
LocalParameter |
Implementation of SBML Level 3's LocalParameter construct.
|
Model |
Implementation of SBML's Model construct.
|
ModelCreator |
Representation of MIRIAM-compliant model creator data used
in
ModelHistory . |
ModelCreatorList |   |
ModelDefinition |   |
ModelHistory |
Representation of MIRIAM-compliant model history data.
|
ModifierSpeciesReference |
Implementation of SBML's ModifierSpeciesReference construct.
|
Objective |   |
OFStream |
Wrapper class for the C++ standard file stream
ofstream . |
OStream |
Wrapper class for the C++ standard streams
cout ,
cerr , and clog . |
OStringStream |
Wrapper class for the C++ standard stream
ostringstream . |
Parameter |
Implementation of SBML's Parameter construct.
|
Point |   |
Port |   |
Priority |
Implementation of SBML Level 3's Priority construct
for
Event . |
RateRule |
Implementation of SBML's RateRule construct.
|
RDFAnnotationParser |
Read/write/manipulate RDF annotations stored in SBML
annotation elements.
|
Reaction |
Implementation of SBML's Reaction construct.
|
ReactionGlyph |   |
ReferenceGlyph |   |
ReplacedBy |   |
ReplacedElement |   |
Replacing |   |
Rule |
Implementation of SBML's Rule construct.
|
SBase |
Implementation of SBase, the base class of most SBML objects.
|
SBaseList |   |
SBasePlugin |
Representation of a plug-in object of SBML's package extension.
|
SBaseRef |   |
SBMLConverter |
Base class for SBML converters.
|
SBMLConverterRegistry |
Registry of all SBML converters.
|
SBMLDocument |
Container for an SBML document and interface for global operations
on SBML documents.
|
SBMLDocumentPlugin |   |
SBMLError |
Representation of errors, warnings and other diagnostics
|
SBMLErrorLog |
Log of errors and other events encountered during SBML processing.
|
SBMLExtensionException |   |
SBMLExtensionRegistry |   |
SBMLExternalValidator |   |
SBMLFileResolver |   |
SBMLFunctionDefinitionConverter |
SBML converter for replacing function definitions.
|
SBMLInitialAssignmentConverter |
SBML converter for replacing initial assignments.
|
SBMLLevelVersionConverter |
SBML converter for transforming documents from one Level+Version to another.
|
SBMLNamespaces |
Class to store SBML level, version and namespace information.
|
SBMLNamespacesList |   |
SBMLReader |
Methods for reading SBML from files and text strings.
|
SBMLResolver |   |
SBMLResolverRegistry |   |
SBMLRuleConverter |
SBML converter for reordering rules and assignments in a model.
|
SBMLStripPackageConverter |
SBML converter for removing packages.
|
SBMLUnitsConverter |
SBML converter to convert a model's units to SI units.
|
SBMLUri |   |
SBMLValidator |
Base class for SBML validators
|
SBMLWriter |
Methods for writing SBML to files and text strings.
|
SBO |
Methods for interacting with Systems Biology Ontology terms.
|
SimpleSpeciesReference |
Implementation of SBML's SimpleSpeciesReference construct.
|
Species |
Implementation of SBML's Species construct.
|
SpeciesGlyph |   |
SpeciesReference |
Implementation of SBML's SpeciesReference construct.
|
SpeciesReferenceGlyph |   |
SpeciesType |
Implementation of SBML Level 2's SpeciesType construct.
|
StoichiometryMath |
Implementation of SBML Level 2's StoichiometryMath construct.
|
Submodel |   |
SWIGTYPE_p_CompVisitor |   |
SWIGTYPE_p_FbcVisitor |   |
SyntaxChecker |
Methods for checking syntax of SBML identifiers and other strings.
|
TextGlyph |   |
Trigger |
Implementation of SBML's Trigger construct for Event.
|
Unit |
Implementation of SBML's Unit construct.
|
UnitDefinition |
Implementation of SBML's UnitDefinition construct.
|
XMLAttributes |
Representation of attributes on an XML node.
|
XMLError |
Representation of errors, warnings and other diagnostics
|
XMLErrorLog |
Log of errors and other events encountered while processing an XML
file or data stream.
|
XMLNamespaces |
Representation of XML Namespaces.
|
XMLNode |
Representation of a node in an XML document tree.
|
XMLToken |
Representation of a token in an XML stream.
|
XMLTriple |
Representation of a qualified XML name.
|
Exception | Description |
---|---|
SBMLConstructorException |
Class of exceptions thrown by constructors of some libSBML objects.
|
XMLConstructorException |
Class of exceptions thrown by constructors of some libSBML objects.
|