public class ReactionGlyph extends GraphicalObject
Constructor and Description |
---|
ReactionGlyph()   |
ReactionGlyph(LayoutPkgNamespaces layoutns)   |
ReactionGlyph(LayoutPkgNamespaces layoutns,
String id)   |
ReactionGlyph(LayoutPkgNamespaces layoutns,
String id,
String reactionId)   |
ReactionGlyph(long level)   |
ReactionGlyph(long level,
long version)   |
ReactionGlyph(long level,
long version,
long pkgVersion)   |
ReactionGlyph(ReactionGlyph source)   |
ReactionGlyph(XMLNode node)   |
ReactionGlyph(XMLNode node,
long l2version)   |
getBoundingBox, getMetaIdRef, isSetMetaIdRef, setBoundingBox, setMetaIdRef, unsetId, unsetMetaIdRef
addCVTerm, addCVTerm, appendAnnotation, appendAnnotation, appendNotes, appendNotes, disablePackage, enablePackage, equals, getAncestorOfType, getAncestorOfType, getAnnotation, getAnnotationString, getColumn, getCVTerm, getCVTerms, getElementByMetaId, getElementBySId, getLevel, getLine, getListOfAllElements, getListOfAllElementsFromPlugins, getMetaId, getModel, getModelHistory, getNamespaces, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getPackageName, getPackageVersion, getParentSBMLObject, getPlugin, getPlugin, getResourceBiologicalQualifier, getResourceModelQualifier, getSBMLDocument, getSBOTerm, getSBOTermAsURL, getSBOTermID, getVersion, hashCode, hasValidLevelVersionNamespaceCombination, isPackageEnabled, isPackageURIEnabled, isSetAnnotation, isSetMetaId, isSetModelHistory, isSetNotes, isSetSBOTerm, matchesRequiredSBMLNamespacesForAddition, matchesSBMLNamespaces, removeFromParentAndDelete, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, renameMetaIdRefs, renameSIdRefs, renameUnitSIdRefs, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setMetaId, setModelHistory, setNamespaces, setNotes, setNotes, setNotes, setSBOTerm, setSBOTerm, toSBML, unsetAnnotation, unsetCVTerms, unsetMetaId, unsetModelHistory, unsetName, unsetNotes, unsetSBOTerm
public ReactionGlyph() throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(LayoutPkgNamespaces layoutns) throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(LayoutPkgNamespaces layoutns, String id) throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(LayoutPkgNamespaces layoutns, String id, String reactionId) throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(long level) throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(long level, long version) throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(long level, long version, long pkgVersion) throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(ReactionGlyph source) throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(XMLNode node) throws SBMLConstructorException
SBMLConstructorException
public ReactionGlyph(XMLNode node, long l2version) throws SBMLConstructorException
SBMLConstructorException
public void addSpeciesReferenceGlyph(SpeciesReferenceGlyph glyph)
public ReactionGlyph cloneObject()
SBase
object.
cloneObject
 in class GraphicalObject
SBase
object.public CubicBezier createCubicBezier()
public LineSegment createLineSegment()
public SpeciesReferenceGlyph createSpeciesReferenceGlyph()
public void delete()
In general, application software will not need to call this method directly. The Java language binding for libSBML is implemented as a language wrapper that provides a Java interface to libSBML's underlying C++/C code. Some of the Java methods return objects that are linked to objects created not by Java code, but by C++ code. The Java objects wrapped around them will be deleted when the garbage collector invokes the corresponding C++ finalize()
methods for the objects. The finalize()
methods in turn call the ReactionGlyph.delete()
method on the libSBML object.
This method is exposed in case calling programs want to ensure that the underlying object is freed immediately, and not at some arbitrary time determined by the Java garbage collector. In normal usage, callers do not need to invoke ReactionGlyph.delete()
themselves.
delete
 in class GraphicalObject
public String getElementName()
This is overridden by subclasses to return a string appropriate to the
SBML component. For example, Model
defines it as returning
'model'
, CompartmentType
defines it as returning 'compartmentType'
,
and so on.
getElementName
 in class GraphicalObject
public long getIndexForSpeciesReferenceGlyph(String id)
public ListOfSpeciesReferenceGlyphs getListOfSpeciesReferenceGlyphs()
public long getNumSpeciesReferenceGlyphs()
public String getReactionId()
public SpeciesReferenceGlyph getSpeciesReferenceGlyph(long index)
public int getTypeCode()
This method may return the type code of this SBML object, or it may
return SBML_UNKNOWN
. This
is because subclasses of SBase
are not required to implement this
method to return a type code. This method is meant primarily for the
LibSBML C interface, in which class and subclass information is not
readily available.
getTypeCode
 in class GraphicalObject
SBML_UNKNOWN
(the default).
ReactionGlyph.getElementName()
,
SBase.getPackageName()
public void initDefaults()
initDefaults
 in class GraphicalObject
public boolean isSetCurve()
public boolean isSetReactionId()
public SpeciesReferenceGlyph removeSpeciesReferenceGlyph(long index)
public SpeciesReferenceGlyph removeSpeciesReferenceGlyph(String id)
public int setReactionId(String id)
public XMLNode toXML()
toXML
 in class GraphicalObject