Class and Description |
---|
AlgebraicRule
Implementation of SBML's AlgebraicRule construct.
|
AssignmentRule
Implementation of SBML's AssignmentRule construct.
|
Association  |
ASTNode
Abstract Syntax Tree (AST) representation of a
mathematical expression.
|
ASTNodeList  |
BoundingBox  |
Compartment
Implementation of SBML's Compartment construct.
|
CompartmentGlyph  |
CompartmentType
Implementation of SBML's Level 2's CompartmentType construct.
|
CompBase  |
CompExtension  |
CompModelPlugin  |
CompPkgNamespaces
Class to store level, version and namespace information of SBML extension
package.
|
CompSBasePlugin  |
CompSBMLDocumentPlugin  |
Constraint
Implementation of SBML's Constraint construct.
|
ConversionOption
Class of object that encapsulates a conversion option.
|
ConversionProperties
Class of object that encapsulates the properties of an SBML converter.
|
CubicBezier  |
Curve  |
CVTerm
Representation of MIRIAM-compliant controlled vocabulary annotation.
|
CVTermList  |
Date
Representation of MIRIAM-compliant dates used in
ModelHistory . |
DateList  |
Delay
Implementation of SBML's Delay construct for Event.
|
Deletion  |
Dimensions  |
Event
Implementation of SBML's Event construct.
|
EventAssignment
Implementation of SBML's EventAssignment construct for Event.
|
ExternalModelDefinition  |
FbcExtension  |
FbcModelPlugin  |
FbcPkgNamespaces
Class to store level, version and namespace information of SBML extension
package.
|
FbcSpeciesPlugin  |
FluxBound  |
FluxObjective  |
FunctionDefinition
Implementation of SBML's FunctionDefinition construct.
|
GeneAssociation  |
GeneralGlyph  |
GraphicalObject  |
InitialAssignment
Implementation of SBML's InitialAssignment construct.
|
KineticLaw
Implementation of SBML's KineticLaw construct.
|
L3ParserSettings
A helper class for controlling the behavior of the text-string
formula parser.
|
Layout  |
LayoutExtension  |
LayoutModelPlugin  |
LayoutPkgNamespaces
Class to store level, version and namespace information of SBML extension
package.
|
LayoutSpeciesReferencePlugin  |
libsbmlConstants  |
LineSegment  |
ListOf
Parent class for the various SBML 'ListOfXYZ' classes.
|
ListOfCompartmentGlyphs  |
ListOfCompartments
Implementation of SBML Level 2's ListOfCompartments construct.
|
ListOfCompartmentTypes
Implementation of SBML's ListOfCompartmentTypes construct.
|
ListOfConstraints
Implementation of SBML's ListOfConstraints construct.
|
ListOfDeletions  |
ListOfEventAssignments
Implementation of SBML's ListOfEventAssignments construct.
|
ListOfEvents
Implementation of SBML's ListOfEvents construct.
|
ListOfExternalModelDefinitions  |
ListOfFluxBounds  |
ListOfFluxObjectives  |
ListOfFunctionDefinitions
Implementation of SBML's ListOfFunctionDefinitions construct.
|
ListOfGeneAssociations  |
ListOfGraphicalObjects  |
ListOfInitialAssignments
Implementation of SBML's ListOfInitialAssignments construct.
|
ListOfLayouts  |
ListOfLineSegments  |
ListOfLocalParameters
Implementation of SBML Level 3's ListOfLocalParameters construct.
|
ListOfModelDefinitions  |
ListOfObjectives  |
ListOfParameters
Implementation of SBML's ListOfParameters construct.
|
ListOfPorts  |
ListOfReactionGlyphs  |
ListOfReactions
Implementation of SBML's ListOfReactions construct.
|
ListOfReferenceGlyphs  |
ListOfReplacedElements  |
ListOfRules
Implementation of SBML's ListOfRules construct.
|
ListOfSpecies
Implementation of SBML Level 2's ListOfSpecies construct.
|
ListOfSpeciesGlyphs  |
ListOfSpeciesReferenceGlyphs  |
ListOfSpeciesReferences
Implementation of SBML's ListOfSpeciesReferences construct.
|
ListOfSpeciesTypes
Implementation of SBML's ListOfSpeciesTypes construct.
|
ListOfSubmodels  |
ListOfTextGlyphs  |
ListOfUnitDefinitions
Implementation of SBML's ListOfUnitDefinitions construct.
|
ListOfUnits
Implementation of SBML's ListOfUnits construct.
|
LocalParameter
Implementation of SBML Level 3's LocalParameter construct.
|
Model
Implementation of SBML's Model construct.
|
ModelCreator
Representation of MIRIAM-compliant model creator data used
in
ModelHistory . |
ModelCreatorList  |
ModelDefinition  |
ModelHistory
Representation of MIRIAM-compliant model history data.
|
ModifierSpeciesReference
Implementation of SBML's ModifierSpeciesReference construct.
|
Objective  |
OStream
Wrapper class for the C++ standard streams
cout ,
cerr , and clog . |
Parameter
Implementation of SBML's Parameter construct.
|
Point  |
Port  |
Priority
Implementation of SBML Level 3's Priority construct
for
Event . |
RateRule
Implementation of SBML's RateRule construct.
|
Reaction
Implementation of SBML's Reaction construct.
|
ReactionGlyph  |
ReferenceGlyph  |
ReplacedBy  |
ReplacedElement  |
Replacing  |
Rule
Implementation of SBML's Rule construct.
|
SBase
Implementation of SBase, the base class of most SBML objects.
|
SBaseExtensionPoint
Representation of an extension point of SBML's package extension.
|
SBaseList  |
SBasePlugin
Representation of a plug-in object of SBML's package extension.
|
SBaseRef  |
SBMLConstructorException
Class of exceptions thrown by constructors of some libSBML objects.
|
SBMLConverter
Base class for SBML converters.
|
SBMLConverterRegistry
Registry of all SBML converters.
|
SBMLDocument
Container for an SBML document and interface for global operations
on SBML documents.
|
SBMLDocumentPlugin  |
SBMLError
Representation of errors, warnings and other diagnostics
|
SBMLErrorLog
Log of errors and other events encountered during SBML processing.
|
SBMLExtension
The core component of SBML's package extension.
|
SBMLExtensionRegistry  |
SBMLExternalValidator  |
SBMLFileResolver  |
SBMLFunctionDefinitionConverter
SBML converter for replacing function definitions.
|
SBMLInitialAssignmentConverter
SBML converter for replacing initial assignments.
|
SBMLLevelVersionConverter
SBML converter for transforming documents from one Level+Version to another.
|
SBMLNamespaces
Class to store SBML level, version and namespace information.
|
SBMLNamespacesList  |
SBMLResolver  |
SBMLResolverRegistry  |
SBMLRuleConverter
SBML converter for reordering rules and assignments in a model.
|
SBMLStripPackageConverter
SBML converter for removing packages.
|
SBMLUnitsConverter
SBML converter to convert a model's units to SI units.
|
SBMLUri  |
SBMLValidator
Base class for SBML validators
|
SimpleSpeciesReference
Implementation of SBML's SimpleSpeciesReference construct.
|
Species
Implementation of SBML's Species construct.
|
SpeciesGlyph  |
SpeciesReference
Implementation of SBML's SpeciesReference construct.
|
SpeciesReferenceGlyph  |
SpeciesType
Implementation of SBML Level 2's SpeciesType construct.
|
StoichiometryMath
Implementation of SBML Level 2's StoichiometryMath construct.
|
Submodel  |
SWIGTYPE_p_CompVisitor  |
SWIGTYPE_p_FbcVisitor  |
SWIGTYPE_p_List  |
SWIGTYPE_p_std__ostream  |
SWIGTYPE_p_std__vectorT_std__string_t  |
TextGlyph  |
Trigger
Implementation of SBML's Trigger construct for Event.
|
Unit
Implementation of SBML's Unit construct.
|
UnitDefinition
Implementation of SBML's UnitDefinition construct.
|
XMLAttributes
Representation of attributes on an XML node.
|
XMLConstructorException
Class of exceptions thrown by constructors of some libSBML objects.
|
XMLError
Representation of errors, warnings and other diagnostics
|
XMLErrorLog
Log of errors and other events encountered while processing an XML
file or data stream.
|
XMLNamespaces
Representation of XML Namespaces.
|
XMLNode
Representation of a node in an XML document tree.
|
XMLToken
Representation of a token in an XML stream.
|
XMLTriple
Representation of a qualified XML name.
|