public class ReplacedBy extends Replacing
Constructor and Description |
---|
ReplacedBy()   |
ReplacedBy(CompPkgNamespaces compns)   |
ReplacedBy(long level)   |
ReplacedBy(long level,
long version)   |
ReplacedBy(long level,
long version,
long pkgVersion)   |
ReplacedBy(ReplacedBy source)   |
Modifier and Type | Method and Description |
---|---|
boolean |
acceptComp(SWIGTYPE_p_CompVisitor v)   |
SBase |
cloneObject()
Creates and returns a deep copy of this
SBase object. |
void |
delete()
Explicitly deletes the underlying native object.
|
String |
getElementName()
Returns the XML element name of this object.
|
int |
getTypeCode()
Returns the libSBML type code for this object.
|
int |
performReplacement()   |
int |
removeFromParentAndDelete()
Removes itself from its parent.
|
getSubmodelRef, isSetSubmodelRef, renameSIdRefs, replaceWithAndMaybeDelete, saveReferencedElement, setSubmodelRef, unsetSubmodelRef
clearReferencedElement, createSBaseRef, getElementByMetaId, getElementBySId, getIdRef, getMetaIdRef, getNumReferents, getPortRef, getReferencedElement, getReferencedElementFrom, getSBaseRef, getUnitRef, isSetIdRef, isSetMetaIdRef, isSetPortRef, isSetSBaseRef, isSetUnitRef, performDeletion, setIdRef, setMetaIdRef, setPortRef, setSBaseRef, setUnitRef, unsetIdRef, unsetMetaIdRef, unsetPortRef, unsetSBaseRef, unsetUnitRef
getPackageName, getPackageURI, getPackageVersion, getParentModel
addCVTerm, addCVTerm, appendAnnotation, appendAnnotation, appendNotes, appendNotes, disablePackage, enablePackage, equals, getAncestorOfType, getAncestorOfType, getAnnotation, getAnnotationString, getColumn, getCVTerm, getCVTerms, getLevel, getLine, getListOfAllElements, getListOfAllElementsFromPlugins, getMetaId, getModel, getModelHistory, getNamespaces, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParentSBMLObject, getPlugin, getPlugin, getResourceBiologicalQualifier, getResourceModelQualifier, getSBMLDocument, getSBOTerm, getSBOTermAsURL, getSBOTermID, getVersion, hashCode, hasValidLevelVersionNamespaceCombination, isPackageEnabled, isPackageURIEnabled, isSetAnnotation, isSetMetaId, isSetModelHistory, isSetNotes, isSetSBOTerm, matchesRequiredSBMLNamespacesForAddition, matchesSBMLNamespaces, removeTopLevelAnnotationElement, removeTopLevelAnnotationElement, renameMetaIdRefs, renameUnitSIdRefs, replaceTopLevelAnnotationElement, replaceTopLevelAnnotationElement, setAnnotation, setAnnotation, setMetaId, setModelHistory, setNamespaces, setNotes, setNotes, setNotes, setSBOTerm, setSBOTerm, toSBML, unsetAnnotation, unsetCVTerms, unsetId, unsetMetaId, unsetModelHistory, unsetName, unsetNotes, unsetSBOTerm
public ReplacedBy() throws SBMLConstructorException
SBMLConstructorException
public ReplacedBy(CompPkgNamespaces compns) throws SBMLConstructorException
SBMLConstructorException
public ReplacedBy(long level) throws SBMLConstructorException
SBMLConstructorException
public ReplacedBy(long level, long version) throws SBMLConstructorException
SBMLConstructorException
public ReplacedBy(long level, long version, long pkgVersion) throws SBMLConstructorException
SBMLConstructorException
public ReplacedBy(ReplacedBy source) throws SBMLConstructorException
SBMLConstructorException
public boolean acceptComp(SWIGTYPE_p_CompVisitor v)
public SBase cloneObject()
SBase
object.
cloneObject
 in class SBaseRef
SBase
object.public void delete()
In general, application software will not need to call this method directly. The Java language binding for libSBML is implemented as a language wrapper that provides a Java interface to libSBML's underlying C++/C code. Some of the Java methods return objects that are linked to objects created not by Java code, but by C++ code. The Java objects wrapped around them will be deleted when the garbage collector invokes the corresponding C++ finalize()
methods for the objects. The finalize()
methods in turn call the ReplacedBy.delete()
method on the libSBML object.
This method is exposed in case calling programs want to ensure that the underlying object is freed immediately, and not at some arbitrary time determined by the Java garbage collector. In normal usage, callers do not need to invoke ReplacedBy.delete()
themselves.
public String getElementName()
This is overridden by subclasses to return a string appropriate to the
SBML component. For example, Model
defines it as returning
'model'
, CompartmentType
defines it as returning 'compartmentType'
,
and so on.
getElementName
 in class SBaseRef
public int getTypeCode()
This method may return the type code of this SBML object, or it may
return SBML_UNKNOWN
. This
is because subclasses of SBase
are not required to implement this
method to return a type code. This method is meant primarily for the
LibSBML C interface, in which class and subclass information is not
readily available.
getTypeCode
 in class SBaseRef
SBML_UNKNOWN
(the default).
ReplacedBy.getElementName()
,
CompBase.getPackageName()
public int performReplacement()
performReplacement
 in class Replacing
public int removeFromParentAndDelete()
ListOf
objects). Pure virutal, as every SBase
element has different parents,
and therefore different methods of removing itself. Will fail (and
not delete itself) if it has no parent object. This function is
designed to be overridden, but for all objects whose parent is of the
class ListOf
, the default implementation will work.
removeFromParentAndDelete
 in class SBaseRef