Modifier and Type | Method and Description |
---|---|
SBMLDocument |
SBMLDocument.cloneObject()
Creates and returns a deep copy of this
SBMLDocument . |
SBMLDocument |
SBMLConverter.getDocument()
Returns the SBML document that is the subject of the conversions.
|
SBMLDocument |
SBMLValidator.getDocument()
Returns the current SBML document in use by this validator.
|
SBMLDocument |
SBase.getSBMLDocument()
Returns the
SBMLDocument object containing this object instance. |
SBMLDocument |
SBasePlugin.getSBMLDocument()
Returns the parent
SBMLDocument of this plugin object. |
SBMLDocument |
SBMLReader.readSBML(String filename)
Reads an SBML document from a file.
|
static SBMLDocument |
libsbml.readSBML(String filename)
Reads an SBML document from the given file
filename . |
SBMLDocument |
SBMLReader.readSBMLFromFile(String filename)
Reads an SBML document from a file.
|
static SBMLDocument |
libsbml.readSBMLFromFile(String filename)
Reads an SBML document from the given file
filename . |
SBMLDocument |
SBMLReader.readSBMLFromString(String xml)
Reads an SBML document from the given XML string.
|
static SBMLDocument |
libsbml.readSBMLFromString(String xml)
Reads an SBML document from a string assumed to be in XML format.
|
SBMLDocument |
SBMLFileResolver.resolve(String uri) |
SBMLDocument |
SBMLResolver.resolve(String uri) |
SBMLDocument |
SBMLResolverRegistry.resolve(String uri) |
SBMLDocument |
SBMLFileResolver.resolve(String uri,
String baseUri) |
SBMLDocument |
SBMLResolver.resolve(String uri,
String baseUri) |
SBMLDocument |
SBMLResolverRegistry.resolve(String uri,
String baseUri) |
Modifier and Type | Method and Description |
---|---|
void |
SBMLExtensionRegistry.disableUnusedPackages(SBMLDocument doc)
Goes through all extensions in the list of plugins of the given document
and disables all plugins that are not being used.
|
void |
SBMLExtensionRegistry.enableL2NamespaceForDocument(SBMLDocument doc)
Enables all extensions that support serialization / deserialization with
SBML Annotations.
|
int |
SBMLConverter.setDocument(SBMLDocument doc)
Sets the current SBML document to the given
SBMLDocument object. |
int |
SBMLValidator.setDocument(SBMLDocument doc)
Sets the current SBML document to the given
SBMLDocument object. |
long |
SBMLValidator.validate(SBMLDocument d)
Validates the given
SBMLDocument object. |
boolean |
SBMLWriter.writeSBML(SBMLDocument d,
OStream stream)
Writes the given SBML document to the output stream.
|
boolean |
SBMLWriter.writeSBML(SBMLDocument d,
String filename)
Writes the given SBML document to filename.
|
static int |
libsbml.writeSBML(SBMLDocument d,
String filename)
Writes the given SBML document
d to the file named by filename . |
boolean |
SBMLWriter.writeSBMLToFile(SBMLDocument d,
String filename)
Writes the given SBML document to filename.
|
static int |
libsbml.writeSBMLToFile(SBMLDocument d,
String filename)
Writes the given SBML document
d to the file filename . |
String |
SBMLWriter.writeSBMLToString(SBMLDocument d)
Writes the given SBML document to an in-memory string and returns a
pointer to it.
|
static String |
libsbml.writeSBMLToString(SBMLDocument d)
Writes the given SBML document
d to an in-memory string and
returns the string. |
Constructor and Description |
---|
SBMLDocument(SBMLDocument orig)
Copy constructor; creates a copy of this
SBMLDocument . |