001/* ---------------------------------------------------------------------------- 002 * This file was automatically generated by SWIG (http://www.swig.org). 003 * Version 2.0.11 004 * 005 * Do not make changes to this file unless you know what you are doing--modify 006 * the SWIG interface file instead. 007 * ----------------------------------------------------------------------------- */ 008 009package org.sbml.libsbml; 010 011public class ReactionGlyph extends GraphicalObject { 012 private long swigCPtr; 013 014 protected ReactionGlyph(long cPtr, boolean cMemoryOwn) 015 { 016 super(libsbmlJNI.ReactionGlyph_SWIGUpcast(cPtr), cMemoryOwn); 017 swigCPtr = cPtr; 018 } 019 020 protected static long getCPtr(ReactionGlyph obj) 021 { 022 return (obj == null) ? 0 : obj.swigCPtr; 023 } 024 025 protected static long getCPtrAndDisown (ReactionGlyph obj) 026 { 027 long ptr = 0; 028 029 if (obj != null) 030 { 031 ptr = obj.swigCPtr; 032 obj.swigCMemOwn = false; 033 } 034 035 return ptr; 036 } 037 038 protected void finalize() { 039 delete(); 040 } 041 042 public synchronized void delete() { 043 if (swigCPtr != 0) { 044 if (swigCMemOwn) { 045 swigCMemOwn = false; 046 libsbmlJNI.delete_ReactionGlyph(swigCPtr); 047 } 048 swigCPtr = 0; 049 } 050 super.delete(); 051 } 052 053 public ReactionGlyph(long level, long version, long pkgVersion) throws org.sbml.libsbml.SBMLConstructorException { 054 this(libsbmlJNI.new_ReactionGlyph__SWIG_0(level, version, pkgVersion), true); 055 } 056 057 public ReactionGlyph(long level, long version) throws org.sbml.libsbml.SBMLConstructorException { 058 this(libsbmlJNI.new_ReactionGlyph__SWIG_1(level, version), true); 059 } 060 061 public ReactionGlyph(long level) throws org.sbml.libsbml.SBMLConstructorException { 062 this(libsbmlJNI.new_ReactionGlyph__SWIG_2(level), true); 063 } 064 065 public ReactionGlyph() throws org.sbml.libsbml.SBMLConstructorException { 066 this(libsbmlJNI.new_ReactionGlyph__SWIG_3(), true); 067 } 068 069 public ReactionGlyph(LayoutPkgNamespaces layoutns) throws org.sbml.libsbml.SBMLConstructorException { 070 this(libsbmlJNI.new_ReactionGlyph__SWIG_4(LayoutPkgNamespaces.getCPtr(layoutns), layoutns), true); 071 } 072 073 public ReactionGlyph(LayoutPkgNamespaces layoutns, String id) throws org.sbml.libsbml.SBMLConstructorException { 074 this(libsbmlJNI.new_ReactionGlyph__SWIG_5(LayoutPkgNamespaces.getCPtr(layoutns), layoutns, id), true); 075 } 076 077 public ReactionGlyph(LayoutPkgNamespaces layoutns, String id, String reactionId) throws org.sbml.libsbml.SBMLConstructorException { 078 this(libsbmlJNI.new_ReactionGlyph__SWIG_6(LayoutPkgNamespaces.getCPtr(layoutns), layoutns, id, reactionId), true); 079 } 080 081 public ReactionGlyph(XMLNode node, long l2version) throws org.sbml.libsbml.SBMLConstructorException { 082 this(libsbmlJNI.new_ReactionGlyph__SWIG_7(XMLNode.getCPtr(node), node, l2version), true); 083 } 084 085 public ReactionGlyph(XMLNode node) throws org.sbml.libsbml.SBMLConstructorException { 086 this(libsbmlJNI.new_ReactionGlyph__SWIG_8(XMLNode.getCPtr(node), node), true); 087 } 088 089 public ReactionGlyph(ReactionGlyph source) throws org.sbml.libsbml.SBMLConstructorException { 090 this(libsbmlJNI.new_ReactionGlyph__SWIG_9(ReactionGlyph.getCPtr(source), source), true); 091 } 092 093 public String getReactionId() { 094 return libsbmlJNI.ReactionGlyph_getReactionId(swigCPtr, this); 095 } 096 097 public int setReactionId(String id) { 098 return libsbmlJNI.ReactionGlyph_setReactionId(swigCPtr, this, id); 099 } 100 101 public boolean isSetReactionId() { 102 return libsbmlJNI.ReactionGlyph_isSetReactionId(swigCPtr, this); 103 } 104 105 public ListOfSpeciesReferenceGlyphs getListOfSpeciesReferenceGlyphs() { 106 long cPtr = libsbmlJNI.ReactionGlyph_getListOfSpeciesReferenceGlyphs(swigCPtr, this); 107 return (cPtr == 0) ? null : new ListOfSpeciesReferenceGlyphs(cPtr, false); 108 } 109 110 public SpeciesReferenceGlyph getSpeciesReferenceGlyph(long index) { 111 long cPtr = libsbmlJNI.ReactionGlyph_getSpeciesReferenceGlyph__SWIG_0(swigCPtr, this, index); 112 return (cPtr == 0) ? null : new SpeciesReferenceGlyph(cPtr, false); 113 } 114 115 public void addSpeciesReferenceGlyph(SpeciesReferenceGlyph glyph) { 116 libsbmlJNI.ReactionGlyph_addSpeciesReferenceGlyph(swigCPtr, this, SpeciesReferenceGlyph.getCPtr(glyph), glyph); 117 } 118 119 public long getNumSpeciesReferenceGlyphs() { 120 return libsbmlJNI.ReactionGlyph_getNumSpeciesReferenceGlyphs(swigCPtr, this); 121 } 122 123 public void initDefaults() { 124 libsbmlJNI.ReactionGlyph_initDefaults(swigCPtr, this); 125 } 126 127 public Curve getCurve() { 128 long cPtr = libsbmlJNI.ReactionGlyph_getCurve__SWIG_0(swigCPtr, this); 129 return (cPtr == 0) ? null : new Curve(cPtr, false); 130 } 131 132 public void setCurve(Curve curve) { 133 libsbmlJNI.ReactionGlyph_setCurve(swigCPtr, this, Curve.getCPtr(curve), curve); 134 } 135 136 public boolean isSetCurve() { 137 return libsbmlJNI.ReactionGlyph_isSetCurve(swigCPtr, this); 138 } 139 140 public SpeciesReferenceGlyph createSpeciesReferenceGlyph() { 141 long cPtr = libsbmlJNI.ReactionGlyph_createSpeciesReferenceGlyph(swigCPtr, this); 142 return (cPtr == 0) ? null : new SpeciesReferenceGlyph(cPtr, false); 143 } 144 145 public LineSegment createLineSegment() { 146 return (LineSegment) libsbml.DowncastSBase(libsbmlJNI.ReactionGlyph_createLineSegment(swigCPtr, this), false); 147} 148 149 public CubicBezier createCubicBezier() { 150 long cPtr = libsbmlJNI.ReactionGlyph_createCubicBezier(swigCPtr, this); 151 return (cPtr == 0) ? null : new CubicBezier(cPtr, false); 152 } 153 154 public SpeciesReferenceGlyph removeSpeciesReferenceGlyph(long index) { 155 long cPtr = libsbmlJNI.ReactionGlyph_removeSpeciesReferenceGlyph__SWIG_0(swigCPtr, this, index); 156 return (cPtr == 0) ? null : new SpeciesReferenceGlyph(cPtr, true); 157 } 158 159 public SpeciesReferenceGlyph removeSpeciesReferenceGlyph(String id) { 160 long cPtr = libsbmlJNI.ReactionGlyph_removeSpeciesReferenceGlyph__SWIG_1(swigCPtr, this, id); 161 return (cPtr == 0) ? null : new SpeciesReferenceGlyph(cPtr, true); 162 } 163 164 public long getIndexForSpeciesReferenceGlyph(String id) { 165 return libsbmlJNI.ReactionGlyph_getIndexForSpeciesReferenceGlyph(swigCPtr, this, id); 166 } 167 168 169/** 170 * Returns the XML element name of this object. 171 * <p> 172 * This is overridden by subclasses to return a string appropriate to the 173 * SBML component. For example, {@link Model} defines it as returning 174 * <code>'model'</code>, {@link CompartmentType} defines it as returning <code>'compartmentType'</code>, 175 * and so on. 176 */ public 177 String getElementName() { 178 return libsbmlJNI.ReactionGlyph_getElementName(swigCPtr, this); 179 } 180 181 182/** 183 * Creates and returns a deep copy of this {@link SBase} object. 184 * <p> 185 * @return a (deep) copy of this {@link SBase} object. 186 */ public 187 ReactionGlyph cloneObject() { 188 long cPtr = libsbmlJNI.ReactionGlyph_cloneObject(swigCPtr, this); 189 return (cPtr == 0) ? null : new ReactionGlyph(cPtr, true); 190 } 191 192 193/** 194 * Returns the libSBML type code for this object. 195 * <p> 196 * This method may return the type code of this SBML object, or it may 197 * return {@link libsbmlConstants#SBML_UNKNOWN SBML_UNKNOWN}. This 198 * is because subclasses of {@link SBase} are not required to implement this 199 * method to return a type code. This method is meant primarily for the 200 * LibSBML C interface, in which class and subclass information is not 201 * readily available. 202 * <p> 203 * @return the SBML object type code 204 * of this SBML object or 205 * {@link libsbmlConstants#SBML_UNKNOWN SBML_UNKNOWN} (the default). 206 * <p> 207 * @see #getElementName() 208 * @see #getPackageName() 209 */ public 210 int getTypeCode() { 211 return libsbmlJNI.ReactionGlyph_getTypeCode(swigCPtr, this); 212 } 213 214 public XMLNode toXML() { 215 return new XMLNode(libsbmlJNI.ReactionGlyph_toXML(swigCPtr, this), true); 216 } 217 218 219/** 220 * Sets this SBML object to child SBML objects (if any). 221 * (Creates a child-parent relationship by the parent) 222 * <p> 223 * Subclasses must override this function if they define 224 * one ore more child elements. 225 * Basically, this function needs to be called in 226 * constructor, copy constructor, assignment operator. 227 * <p> 228 * <p> 229 * @internal 230 */ public 231 void connectToChild() { 232 libsbmlJNI.ReactionGlyph_connectToChild(swigCPtr, this); 233 } 234 235 236/** 237 * Enables/Disables the given package with this element and child 238 * elements (if any). 239 * (This is an internal implementation for enablePackage function) 240 * <p> 241 * @note Subclasses in which one or more child elements are defined 242 * must override this function. 243 * <p> 244 * <p> 245 * @see #connectToChild() 246 * @internal 247 */ public 248 void enablePackageInternal(String pkgURI, String pkgPrefix, boolean flag) { 249 libsbmlJNI.ReactionGlyph_enablePackageInternal(swigCPtr, this, pkgURI, pkgPrefix, flag); 250 } 251 252}